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Introduction
User Guide
Examples
Tutorials
Reference
Dev Guide
Changelog
GitHub
Introduction
User Guide
Examples
Tutorials
Reference
Dev Guide
Changelog
GitHub
Section Navigation
Getting started
Installing pyxem
Loading Data
Big Data
GPU Computing
Usage
Tutorials
Data Inspection- Preprocessing - Unsupervised ML
Phase/Orientation Mapping
Calibrations
Azimuthal Integral
Strain Mapping
Nanocrystal Segmentation
PDF Analysis Tutorial
Angular Correlations of Amorphous Materials
Analysing magnetic materials using STEM-DPC
Fast template matching
Orientation mapping for Molecular Glasses
Conventions and interoperability
Gallery of Examples
Resources
API reference
detectors
GenericFlatDetector
aliases
Medipix256x256Detector
aliases
Medipix515x515Detector
aliases
calc_mask
data
au_grating
pdnip_glass
zrnb_precipitate
twinned_nanowire
sample_with_g
mgo_nanocrystals
tilt_boundary_data
components
ReducedIntensityCorrectionComponent
trait_added
trait_modified
function
ScatteringFitComponentLobato
trait_added
trait_modified
function
ScatteringFitComponentXTables
trait_added
trait_modified
function
generators
get_DisplacementGradientMap
get_single_DisplacementGradientTensor
CalibrationGenerator
get_correction_matrix
get_diffraction_calibration
get_distortion_residuals
get_elliptical_distortion
get_navigation_calibration
get_rotation_calibration
plot_calibrated_data
plot_corrected_diffraction_pattern
to_ai
IndexationGenerator
VectorIndexationGenerator
index_vectors
refine_best_orientation
refine_n_best_orientations
TemplateIndexationGenerator
ProfileIndexationGenerator
index_peaks
AcceleratedIndexationGenerator
correlate
IntegrationGenerator
extract_intensities
extract_intensities_summation_method
PDFGenerator1D
get_pdf
ReducedIntensityGenerator1D
fit_atomic_scattering
get_reduced_intensity
mask_from_bkgd_pattern
mask_reduced_intensity
set_diffraction_calibration
set_diffraction_offset
set_s_cutoff
subtract_bkgd_pattern
SubpixelrefinementGenerator
center_of_mass_method
conventional_xc
local_gaussian_method
reference_xc
VarianceGenerator
get_diffraction_variance
get_image_variance
VirtualImageGenerator
get_concentric_virtual_images
get_virtual_images_from_mesh
set_ROI_mesh
VirtualDarkFieldGenerator
get_virtual_dark_field_images
libraries
CalibrationDataLibrary
plot_calibration_data
signals
CommonDiffraction
unit
add_navigation_signal
get_integrated_intensity
get_virtual_image
plot_integrated_intensity
to_device
to_host
Correlation2D
get_angular_power
get_summed_angular_power
get_symmetry_coefficient
LazyCorrelation2D
BeamShift
make_linear_plane
to_dpcsignal
LazyBeamShift
DPCBaseSignal
DPCSignal1D
get_bivariate_histogram
to_beamshift
DPCSignal2D
correct_ramp
flip_axis_90_degrees
gaussian_blur
get_bivariate_histogram
get_color_image_with_indicator
get_color_signal
get_magnitude_signal
get_phase_signal
phase_retrieval
rotate_beam_shifts
rotate_data
to_beamshift
LazyDPCBaseSignal
LazyDPCSignal1D
LazyDPCSignal2D
DiffractionVariance1D
DiffractionVariance2D
ImageVariance
DiffractionVectors
center
column_names
detector_shape
has_navigation_axis
num_columns
num_rows
offsets
pixel_calibration
pixel_vectors
scales
units
calculate_cartesian_coordinates
cluster
filter_basis
filter_detector_edge
filter_magnitude
flatten_diffraction_vectors
from_peaks
get_diffracting_pixels_map
get_magnitude_histogram
get_magnitudes
get_pixel_vectors
get_unique_vectors
plot_diffraction_vectors
plot_diffraction_vectors_on_signal
subpixel_refine
to_markers
to_polar
DiffractionVectors1D
DiffractionVectors2D
has_navigation_axis
filter_detector_edge
from_peaks
get_unique_vectors
to_roi
Diffraction1D
LazyDiffraction1D
LazyDiffraction2D
Diffraction2D
ai
add_ellipse_array_as_markers
add_peak_array_as_markers
angular_mask
angular_slice_radial_average
apply_affine_transformation
apply_gain_normalisation
center_direct_beam
center_of_mass
correct_bad_pixels
filter
find_dead_pixels
find_hot_pixels
flip_diffraction_x
flip_diffraction_y
get_azimuthal_integral1d
get_azimuthal_integral2d
get_diffraction_vectors
get_direct_beam_mask
get_direct_beam_position
get_medfilt1d
get_radial_integral
get_variance
intensity_peaks
make_probe_navigation
peak_position_refinement_com
plot
rotate_diffraction
set_ai
shift_diffraction
sigma_clip
subtract_diffraction_background
template_match
template_match_disk
template_match_ring
template_match_with_binary_image
threshold_and_mask
ElectronDiffraction1D
set_diffraction_calibration
set_experimental_parameters
set_scan_calibration
LazyElectronDiffraction1D
LazyElectronDiffraction2D
ElectronDiffraction2D
beam_energy
camera_length
diffraction_calibration
scan_calibration
set_ai
set_diffraction_calibration
set_experimental_parameters
set_scan_calibration
VectorMatchingResults
get_crystallographic_map
get_indexed_diffraction_vectors
PairDistributionFunction1D
normalise_signal
PolarDiffraction2D
get_angular_correlation
get_angular_power
get_full_pearson_correlation
get_pearson_correlation
get_resolved_pearson_correlation
subtract_diffraction_background
LazyPolarDiffraction2D
PolarVectors
has_delta_phi
get_angles
to_cartesian
to_markers
LazyPolarVectors
Power2D
get_map
plot_symmetries
LazyPower2D
ReducedIntensity1D
damp_exponential
damp_extrapolate_to_zero
damp_lorch
damp_low_q_region_erfc
damp_updated_lorch
fit_thermal_multiple_scattering_correction
LearningSegment
correlate_learning_segments
get_ncc_matrix
separate_learning_segments
VDFSegment
correlate_vdf_segments
get_ncc_matrix
get_virtual_electron_diffraction
StrainMap
rotate_strain_basis
Correlation1D
get_symmetry_coefficient
LazyCorrelation1D
DisplacementGradientMap
get_strain_maps
polar_decomposition
VirtualDarkFieldImage
vectors
get_vdf_segments
InSituDiffraction2D
correct_real_space_drift
correct_real_space_drift_fast
get_drift_vectors
get_g2_2d_kresolved
get_time_series
roll_time_axis
LabeledDiffractionVectors2D
is_clustered
cluster_labeled_vectors
map_vectors
plot_clustered
to_markers
utils
plotting
plot_template_over_pattern
ransac_ellipse_tools
is_ellipse_good
make_ellipse_data_points
ellipse_to_markers
get_ellipse_model_ransac
get_ellipse_model_ransac_single_frame
determine_ellipse
vectors
detector_to_fourier
calculate_norms
calculate_norms_ragged
filter_vectors_ragged
filter_vectors_edge_ragged
normalize_or_zero
get_rotation_matrix_between_vectors
get_npeaks
get_angle_cartesian_vec
get_angle_cartesian
filter_vectors_near_basis
vectors_to_polar
to_cart_three_angles
polar_to_cartesian
get_vectors_mesh
get_angles
get_filtered_combinations
convert_to_markers
points_to_polygon
points_to_poly_collection
column_mean
vectors2image
get_three_angles
diffraction
apply_transformation
azimuthal_integrate1d
azimuthal_integrate2d
center_of_mass
circular_mask
convert_affine_to_transform
ellipse_perimeter
find_beam_center_blur
find_beam_center_interpolate
find_beam_offset_cross_correlation
find_hot_pixels
gain_normalise
get_azimuthal_integrator
integrate_radially
investigate_dog_background_removal_interactive
is_cupy_array
match_template
medfilt_1d
normalize_template_match
peaks_as_gvectors
phase_cross_correlation
reference_circle
regional_filter
remove_bad_pixels
remove_dead
sigma_clip
Version
deprecated
interp1d
tqdm
calibration
find_diffraction_calibration
get_electron_wavelength
index_dataset_with_template_rotation
Calibration
UniformDataAxis
deprecated
find_diffraction_calibration
plot_template_over_pattern
determine_ellipse
Bibliography
Citing pyxem
Related projects
License
Where do I start?
UniformDataAxis
calibrate
calibrate
#
UniformDataAxis.
calibrate
(
value_tuple
,
index_tuple
,
modify_calibration
=
True
)
#
On this page
UniformDataAxis.calibrate()
Edit on GitHub
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