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.. _examples-index:

Gallery of Examples
===================

Below is a gallery of examples for different operations in pyxem.



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Plotting
===============
Below is a gallery of examples on how to make nice plots with Matplotlib from hyperspy/ pyxem signals.


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    <div class="sphx-glr-thumbcontainer" tooltip="This example shows how to create a gif from a series of images.  Here we use the &quot;hyperspy&quot; ide...">

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  .. image:: /examples/plotting/images/thumb/sphx_glr_making_a_gif_thumb.png
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  :ref:`sphx_glr_examples_plotting_making_a_gif.py`

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      <div class="sphx-glr-thumbnail-title">Making a Gif</div>
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Data Processing
================
Below is a gallery of examples on how to process 4-D STEM data in pyxem


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    <div class="sphx-glr-thumbcontainer" tooltip="There are two different ways to calibrate a dataset in pyxem and depending on what kind of data...">

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  .. image:: /examples/processing/images/thumb/sphx_glr_calibrating_thumb.png
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  :ref:`sphx_glr_examples_processing_calibrating.py`

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      <div class="sphx-glr-thumbnail-title">Calibrating a dataset</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="If your diffraction data is noisy, you might want to subtract the background from the dataset. ...">

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  .. image:: /examples/processing/images/thumb/sphx_glr_background_subtraction_thumb.png
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  :ref:`sphx_glr_examples_processing_background_subtraction.py`

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      <div class="sphx-glr-thumbnail-title">Background subtraction</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="Centering the Zero Beam">

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  .. image:: /examples/processing/images/thumb/sphx_glr_centering_the_zero_beam_thumb.png
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  :ref:`sphx_glr_examples_processing_centering_the_zero_beam.py`

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      <div class="sphx-glr-thumbnail-title">Centering the Zero Beam</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="If you have a low number of counts in your data, you may want to filter the data to remove nois...">

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  .. image:: /examples/processing/images/thumb/sphx_glr_filtering_data_thumb.png
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  :ref:`sphx_glr_examples_processing_filtering_data.py`

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      <div class="sphx-glr-thumbnail-title">Filtering Data</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="Finding Diffraction Vectors">

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  .. image:: /examples/processing/images/thumb/sphx_glr_vector_finding_thumb.png
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  :ref:`sphx_glr_examples_processing_vector_finding.py`

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      <div class="sphx-glr-thumbnail-title">Finding Diffraction Vectors</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="pyxem now includes built in azimuthal integration functionality. This is useful for extracting ...">

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  .. image:: /examples/processing/images/thumb/sphx_glr_azimuthal_integration_thumb.png
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  :ref:`sphx_glr_examples_processing_azimuthal_integration.py`

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      <div class="sphx-glr-thumbnail-title">Azimuthal Integration (in Pyxem!)</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="- Orientation mapping - Angular Correlation (AC) - Fluctuation Electron Microscopy (FEM) - And ...">

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  .. image:: /examples/processing/images/thumb/sphx_glr_determining_ellipticity_thumb.png
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  :ref:`sphx_glr_examples_processing_determining_ellipticity.py`

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      <div class="sphx-glr-thumbnail-title">Determining Elliptic Distortion</div>
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Standards
=========
Below is a gallery of examples showing different standards in pyxem


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    <div class="sphx-glr-thumbcontainer" tooltip="Pyxem is flexible in how it handles coordinates for a diffraction pattern.">

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  .. image:: /examples/standards/images/thumb/sphx_glr_pixel_coodinates_thumb.png
    :alt:

  :ref:`sphx_glr_examples_standards_pixel_coodinates.py`

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      <div class="sphx-glr-thumbnail-title">Coordinates in Pyxem</div>
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Vectors
=======
Below is a gallery of examples for operations on vectors.


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    <div class="sphx-glr-thumbcontainer" tooltip="This example shows how to perform some basic operations slicing and selecting vectors. This is ...">

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  .. image:: /examples/vectors/images/thumb/sphx_glr_slicing_vectors_thumb.png
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  :ref:`sphx_glr_examples_vectors_slicing_vectors.py`

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      <div class="sphx-glr-thumbnail-title">Operations on vectors</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="This example shows how to identify symmetry (in a glassy system but this could be useful other ...">

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  .. image:: /examples/vectors/images/thumb/sphx_glr_glass_symmetry_thumb.png
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  :ref:`sphx_glr_examples_vectors_glass_symmetry.py`

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      <div class="sphx-glr-thumbnail-title">Glass Symmetry from Vectors</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="This can be used to segment a 4-D STEM dataset into different clusters based on the diffraction...">

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  .. image:: /examples/vectors/images/thumb/sphx_glr_clustering_vectors_thumb.png
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  :ref:`sphx_glr_examples_vectors_clustering_vectors.py`

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      <div class="sphx-glr-thumbnail-title">Clustering Vectors</div>
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Virtual Imaging
===============
Below is a gallery of examples on how to make virtual images from 4-D STEM data in pyxem


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    <div class="sphx-glr-thumbcontainer" tooltip="We can create interactive virtual images by using the interactive method from hyperspy. Because...">

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  .. image:: /examples/virtual_imaging/images/thumb/sphx_glr_interactive_virtual_images_thumb.png
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  :ref:`sphx_glr_examples_virtual_imaging_interactive_virtual_images.py`

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      <div class="sphx-glr-thumbnail-title">Creating Interactive Virtual Images</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="In this example we will show how to create virtual images from vectors. We will use the find_pe...">

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  .. image:: /examples/virtual_imaging/images/thumb/sphx_glr_creating_virtual_images_from_vectors_thumb.png
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  :ref:`sphx_glr_examples_virtual_imaging_creating_virtual_images_from_vectors.py`

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      <div class="sphx-glr-thumbnail-title">Creating Virtual Images from Vectors</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="Other Virtual Imaging">

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  .. image:: /examples/virtual_imaging/images/thumb/sphx_glr_other_virtual_imaging_thumb.png
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  :ref:`sphx_glr_examples_virtual_imaging_other_virtual_imaging.py`

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      <div class="sphx-glr-thumbnail-title">Other Virtual Imaging</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="In this example we will show how to create virtual images for a segmented-like detector.">

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  .. image:: /examples/virtual_imaging/images/thumb/sphx_glr_creating_a_segmented_detector_thumb.png
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  :ref:`sphx_glr_examples_virtual_imaging_creating_a_segmented_detector.py`

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      <div class="sphx-glr-thumbnail-title">Creating a Segmented Detector</div>
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.. toctree::
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   /examples/plotting/index.rst
   /examples/processing/index.rst
   /examples/standards/index.rst
   /examples/vectors/index.rst
   /examples/virtual_imaging/index.rst


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      :download:`Download all examples in Python source code: examples_python.zip </examples/examples_python.zip>`

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download all examples in Jupyter notebooks: examples_jupyter.zip </examples/examples_jupyter.zip>`


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